Transcript: lnc-B3GNT10-1:33

Basic information

LNCipedia transcript ID: lnc-B3GNT10-1:33 
LNCipedia gene ID: lnc-B3GNT10-1
Ensembl Gene ID: ENSG00000260970
Ensembl Transcript ID: ENST00000565320
Location (hg38): chr9:119495375-119524125
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1463 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511548; TCONS_00015744; ENST00000565320.1
Alternative gene names: ENSG00000248653; XLOC_007544; linc-CEP110-7; ENSG00000260970.1; RP11-295D22.1; AC006288.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.0436 non-coding 
CPAT coding probability 5.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GNT10-1:33 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-295D22.1.1-1:1
3.1 lnc-RP11-295D22.1.1-1:1
4.0 lnc-RP11-295D22.1.1-1:1
4.1 lnc-RP11-295D22.1.1-1:1
5.0 lnc-RP11-295D22.1.1-1:1
5.1 lnc-B3GNT10-9:1
5.2 lnc-B3GNT10-1:33