Transcript: lnc-B3GNT10-21:2

Basic information

LNCipedia transcript ID: lnc-B3GNT10-21:2 
LNCipedia gene ID: lnc-B3GNT10-21
Location (hg38): chr9:120841806-120851448
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 906 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000609388.1; ENST00000609388.5
Alternative gene names: ENSG00000226752.3; PSMD5-AS1; ENSG00000226752.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.2743 non-coding 
CPAT coding probability 17.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GNT10-21:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNTRL-1:7
4.0 PSMD5-AS1:2
4.1 PSMD5-AS1:2
5.0 PSMD5-AS1:2
5.1 lnc-B3GNT10-1:2
5.2 lnc-B3GNT10-21:2