Transcript: lnc-B3GNT10-21:29

Basic information

LNCipedia transcript ID: lnc-B3GNT10-21:29 
LNCipedia gene ID: lnc-B3GNT10-21
Location (hg38): chr9:120846682-120851967
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 912 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000450803; ENST00000450803.1; RP11-27I1.2-003; OTTHUMT00000053822.1
Alternative gene names: ENSG00000226752; RP11-27I1.2; ENSG00000226752.1; OTTHUMG00000020572.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.6302 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GNT10-21:29 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNTRL-1:5
3.1 lnc-CNTRL-1:5
4.0 PSMD5-AS1:23
4.1 PSMD5-AS1:23
5.0 PSMD5-AS1:23
5.1 lnc-B3GNT10-1:29
5.2 lnc-B3GNT10-21:29