Transcript: lnc-B3GNT10-21:3

Basic information

LNCipedia transcript ID: lnc-B3GNT10-21:3 
LNCipedia gene ID: lnc-B3GNT10-21
Location (hg38): chr9:120842996-120851440
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 707 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT134520; ENST00000586907.1; ENST00000586907.5
Alternative gene names: ENSG00000226752.3; PSMD5-AS1; ENSG00000226752.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.6302 non-coding 
CPAT coding probability 14.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GNT10-21:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNTRL-1:8
4.0 PSMD5-AS1:3
4.1 PSMD5-AS1:3
5.0 PSMD5-AS1:3
5.1 lnc-B3GNT10-1:3
5.2 lnc-B3GNT10-21:3