Transcript: lnc-B3GNT10-21:30

Basic information

LNCipedia transcript ID: lnc-B3GNT10-21:30 
LNCipedia gene ID: lnc-B3GNT10-21
Location (hg38): chr9:120846733-120851279
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 663 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000587916.1
Alternative gene names: ENSG00000226752.3; PSMD5-AS1; ENSG00000226752.7; ; ENSG00000226752.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -220.2874 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GNT10-21:30 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNTRL-1:16
4.0 PSMD5-AS1:24
4.1 PSMD5-AS1:24
5.0 PSMD5-AS1:24
5.1 lnc-B3GNT10-1:30
5.2 lnc-B3GNT10-21:30