Transcript: lnc-B3GNT10-5:3

Basic information

LNCipedia transcript ID: lnc-B3GNT10-5:3 
LNCipedia gene ID: lnc-B3GNT10-5
Location (hg38): chr9:120047122-120051780
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 338 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016149; NONHSAT134502
Alternative gene names: XLOC_007546; linc-CEP110-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.6732 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GNT10-5:3 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-295D22.1.1-4:2
3.1 lnc-RP11-295D22.1.1-5:2
4.0 lnc-RP11-295D22.1.1-5:2
4.1 lnc-RP11-295D22.1.1-5:2
5.0 lnc-RP11-295D22.1.1-5:2
5.1 lnc-B3GNT10-3:3
5.2 lnc-B3GNT10-5:3