Transcript: lnc-B3GNT2-1:2

Basic information

LNCipedia transcript ID: lnc-B3GNT2-1:2 
LNCipedia gene ID: lnc-B3GNT2-1
Ensembl Gene ID: ENSG00000228541
Ensembl Transcript ID: ENST00000416845
Location (hg38): chr2:62463127-62464070
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 424 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002902; ENST00000416845; ENST00000416845.1; AC093159.1-001; OTTHUMT00000326581.1; NONHSAT071015
Alternative gene names: XLOC_001493; linc-EHBP1; ENSG00000228541; AC093159.1; ENSG00000228541.1; OTTHUMG00000152523.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.965 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GNT2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EHBP1-1:2
3.1 lnc-B3GNT2-1:2
4.0 lnc-B3GNT2-1:2
4.1 lnc-B3GNT2-1:2
5.0 lnc-B3GNT2-1:2
5.1 lnc-PAPOLG-38:2
5.2 lnc-B3GNT2-1:2