Transcript: lnc-B3GNTL1-1:4

Basic information

LNCipedia transcript ID: lnc-B3GNTL1-1:4 
LNCipedia gene ID: lnc-B3GNTL1-1
Ensembl Gene ID: ENSG00000262094
Ensembl Transcript ID: ENST00000574098
Location (hg38): chr17:83220548-83222956
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2409 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000574098.1; AC139099.5-003; OTTHUMT00000438914.1; NONHSAT056785
Alternative gene names: ENSG00000262094.1; AC139099.5; OTTHUMG00000177776.1; AC139099.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.6797 non-coding 
CPAT coding probability 10.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GNTL1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-B3GNTL1-1:4
4.0 lnc-B3GNTL1-1:4
4.1 lnc-B3GNTL1-1:4
5.0 lnc-B3GNTL1-1:4
5.1 lnc-CD7-32:4
5.2 lnc-B3GNTL1-1:4