Transcript: lnc-B4GALNT1-1:3

Basic information

LNCipedia transcript ID: lnc-B4GALNT1-1:3 
LNCipedia gene ID: lnc-B4GALNT1-1
Ensembl Gene ID: ENSG00000224713
Ensembl Transcript ID: ENST00000593846
Location (hg38): chr12:57615228-57619638
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 498 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT028943; ENST00000593846.1
Alternative gene names: ENSG00000224713.3; AC025165.8; ENSG00000224713.4; AC025165.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 320.968 coding 
CPAT coding probability 15.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-B4GALNT1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-B4GALNT1-1:3
4.0 lnc-B4GALNT1-1:3
4.1 lnc-B4GALNT1-1:3
5.0 lnc-B4GALNT1-1:3
5.1 lnc-PMEL-64:4
5.2 lnc-B4GALNT1-1:3