Transcript: lnc-B4GALNT1-1:5

Basic information

LNCipedia transcript ID: lnc-B4GALNT1-1:5 
LNCipedia gene ID: lnc-B4GALNT1-1
RefSeq ID: NR_120450
Location (hg38): chr12:57618405-57621903
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2444 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120450; NR_120450.1
Alternative gene names: LOC101927583


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 148.1239 coding 
CPAT coding probability 77.50% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-B4GALNT1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-B4GALNT1-1:5
4.0 lnc-B4GALNT1-1:5
4.1 lnc-B4GALNT1-1:5
5.0 lnc-B4GALNT1-1:5
5.1 lnc-PMEL-64:3
5.2 lnc-B4GALNT1-1:5