Transcript: lnc-B4GALNT1-1:6

Basic information

LNCipedia transcript ID: lnc-B4GALNT1-1:6 
LNCipedia gene ID: lnc-B4GALNT1-1
Ensembl Gene ID: ENSG00000224713
Ensembl Transcript ID: ENST00000444467
Location (hg38): chr12:57612339-57618171
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2209 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444467.2
Alternative gene names: ENSG00000224713.4; AC025165.8; AC025165.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 320.968 coding 
CPAT coding probability 5.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-B4GALNT1-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-B4GALNT1-1:6
4.1 lnc-B4GALNT1-1:6
5.0 lnc-B4GALNT1-1:6
5.1 lnc-PMEL-64:5
5.2 lnc-B4GALNT1-1:6