Transcript: lnc-B4GALNT3-2:1

Basic information

LNCipedia transcript ID: lnc-B4GALNT3-2:1 
LNCipedia gene ID: lnc-B4GALNT3-2
Ensembl Gene ID: ENSG00000177406
Ensembl Transcript ID: ENST00000537514
RefSeq ID: NR_122124
Location (hg38): chr12:630891-645878
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2338 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000537514.1; RP11-218M22.1-001; OTTHUMT00000397873.1; NONHSAT025356; NR_122124; NR_122124.1
Alternative gene names: ENSG00000177406.4; RP11-218M22.1; OTTHUMG00000168059.1; AC021054.1; LOC100049716


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.5295 non-coding 
CPAT coding probability 1.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B4GALNT3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-B4GALNT3-2:1
4.0 lnc-B4GALNT3-2:1
4.1 lnc-B4GALNT3-2:1
5.0 lnc-B4GALNT3-2:1
5.1 lnc-CLEC4D-158:1
5.2 lnc-B4GALNT3-2:1