Transcript: lnc-B4GALNT3-2:13

Basic information

LNCipedia transcript ID: lnc-B4GALNT3-2:13 
LNCipedia gene ID: lnc-B4GALNT3-2
Location (hg38): chr12:642873-649553
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4472 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000177406.4|ENCT00000086651.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.0684 non-coding 
CPAT coding probability 4.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B4GALNT3-2:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-B4GALNT3-2:13
5.0 lnc-B4GALNT3-2:13
5.1 lnc-CLEC4D-158:9
5.2 lnc-B4GALNT3-2:13