Transcript: lnc-B4GALNT3-4:2

Basic information

LNCipedia transcript ID: lnc-B4GALNT3-4:2 
LNCipedia gene ID: lnc-B4GALNT3-4
Location (hg38): chr12:573030-578313
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5284 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1556:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.7426 non-coding 
CPAT coding probability 10.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B4GALNT3-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-B4GALNT3-4:2
4.1 lnc-B4GALNT3-4:2
5.0 lnc-B4GALNT3-4:2
5.1 lnc-CLEC4D-161:2
5.2 lnc-B4GALNT3-4:2