Transcript: lnc-B4GALT7-1:1

Basic information

LNCipedia transcript ID: lnc-B4GALT7-1:1 
LNCipedia gene ID: lnc-B4GALT7-1
Ensembl Gene ID: ENSG00000247679
Ensembl Transcript ID: ENST00000499900
Location (hg38): chr5:177611253-177619754
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1751 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499900.2; RP11-1277A3.1-001; OTTHUMT00000373233.1; NONHSAT105445
Alternative gene names: ENSG00000247679.2; RP11-1277A3.1; OTTHUMG00000163407.1; AC139795.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.2369 non-coding 
CPAT coding probability 2.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B4GALT7-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-B4GALT7-1:1
4.0 lnc-B4GALT7-1:1
4.1 lnc-B4GALT7-1:1
5.0 lnc-B4GALT7-1:1
5.1 lnc-MAML1-37:2
5.2 lnc-B4GALT7-1:1