Transcript: lnc-BACE1-1:2

Basic information

LNCipedia transcript ID: lnc-BACE1-1:2 
LNCipedia gene ID: lnc-BACE1-1
Ensembl Gene ID: ENSG00000250699
Ensembl Transcript ID: ENST00000504906
Location (hg38): chr11:117316362-117328038
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 488 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504906.1; AP000892.4-001; OTTHUMT00000361620.4; NONHSAT024406
Alternative gene names: ENSG00000250699.1; AP000892.4; OTTHUMG00000160666.4; AP000892.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -553.7561 non-coding 
CPAT coding probability 3.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BACE1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP000892.4.1-1:1
4.0 lnc-AP000892.4.1-1:1
4.1 lnc-AP000892.4.1-1:1
5.0 lnc-AP000892.4.1-1:1
5.1 lnc-SCN4B-27:1
5.2 lnc-BACE1-1:2