Transcript: lnc-BACE1-4:1

Basic information

LNCipedia transcript ID: lnc-BACE1-4:1 
LNCipedia gene ID: lnc-BACE1-4
Location (hg38): chr11:117219124-117223063
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2954 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT024396
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.9233 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BACE1-4:1 no no no no

Available literature

  1. Liu (2014), Attenuated ability of BACE1 to cleave the amyloid precursor protein via silencing long noncoding RNA BACE1‑AS expression., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BACE1-1:1
4.0 lnc-BACE1-1:1
4.1 lnc-BACE1-1:1
5.0 lnc-BACE1-1:1
5.1 lnc-SCN4B-31:1
5.2 lnc-BACE1-4:1