Transcript: lnc-BANK1-2:2

Basic information

LNCipedia transcript ID: lnc-BANK1-2:2 
LNCipedia gene ID: lnc-BANK1-2
Ensembl Gene ID: ENSG00000254531
Ensembl Transcript ID: ENST00000527564
Location (hg38): chr4:101347780-101348883
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 790 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527564.1
Alternative gene names: ENSG00000254531.1; FLJ20021; AP001816.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -167.1925 non-coding 
CPAT coding probability 50.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BANK1-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AP001816.1.1-1:2
4.1 lnc-AP001816.1.1-1:2
5.0 lnc-AP001816.1.1-1:2
5.1 lnc-C4orf17-26:2
5.2 lnc-BANK1-2:2