Transcript: lnc-BANP-14:6

Basic information

LNCipedia transcript ID: lnc-BANP-14:6 
LNCipedia gene ID: lnc-BANP-14
Location (hg38): chr16:88184869-88187003
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1832 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024508; NONHSAT144371
Alternative gene names: XLOC_011826; linc-ZNF469-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.5656 non-coding 
CPAT coding probability 99.82% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BANP-14:6 no no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BANP-1:4
3.1 lnc-BANP-1:5
4.0 lnc-BANP-1:5
4.1 lnc-BANP-1:5
5.0 lnc-BANP-1:5
5.1 lnc-MAP1LC3B-27:6
5.2 lnc-BANP-14:6