Transcript: lnc-BARX2-4:1

Basic information

LNCipedia transcript ID: lnc-BARX2-4:1 
LNCipedia gene ID: lnc-BARX2-4
Ensembl Gene ID: ENSG00000281386
Ensembl Transcript ID: ENST00000626400
Location (hg38): chr11:129591493-129612110
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 527 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626400.1
Alternative gene names: ENSG00000281386.1; RP11-237N19.3; AP003500.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -181.6387 non-coding 
CPAT coding probability 2.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BARX2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-BARX2-4:1
4.1 lnc-BARX2-4:1
5.0 lnc-BARX2-4:1
5.1 lnc-JAM3-37:1
5.2 lnc-BARX2-4:1