Transcript: lnc-BBIP1-2:1

Basic information

LNCipedia transcript ID: lnc-BBIP1-2:1 
LNCipedia gene ID: lnc-BBIP1-2
Ensembl Gene ID: ENSG00000227851
Ensembl Transcript ID: ENST00000421597
Location (hg38): chr10:111349939-111352103
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 427 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00018049; ENST00000421597; ENST00000421597.1; RP11-381K7.1-001; OTTHUMT00000050374.1; NONHSAT016389
Alternative gene names: XLOC_008950; linc-NCRNA00081; ENSG00000227851; RP11-381K7.1; ENSG00000227851.1; OTTHUMG00000019052.1; AC021035.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.3203 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BBIP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BBIP1-1:1
3.1 lnc-BBIP1-2:1
4.0 lnc-BBIP1-2:1
4.1 lnc-BBIP1-2:1
5.0 lnc-BBIP1-2:1
5.1 lnc-BBIP1-2:1
5.2 lnc-BBIP1-2:1