Transcript: lnc-BBS2-1:1

Basic information

LNCipedia transcript ID: lnc-BBS2-1:1 
LNCipedia gene ID: lnc-BBS2-1
Ensembl Gene ID: ENSG00000274031
Ensembl Transcript ID: ENST00000618027
Location (hg38): chr16:56465642-56466162
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 521 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000618027.1
Alternative gene names: ENSG00000274031.1; RP11-413H22.3; AC092140.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -107.8926 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BBS2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-BBS2-1:1
4.1 lnc-BBS2-1:1
5.0 lnc-BBS2-1:1
5.1 lnc-CFAP20-56:1
5.2 lnc-BBS2-1:1