Transcript: lnc-BCAR1-1:1

Basic information

LNCipedia transcript ID: lnc-BCAR1-1:1 
LNCipedia gene ID: lnc-BCAR1-1
Ensembl Gene ID: ENSG00000259999
Ensembl Transcript ID: ENST00000568140
Location (hg38): chr16:75321890-75325048
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 427 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568140.1; RP11-252K23.1-001; OTTHUMT00000435186.1; NONHSAT143732
Alternative gene names: ENSG00000259999.1; RP11-252K23.1; OTTHUMG00000177030.2; AC009054.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -373.2153 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCAR1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BCAR1-1:1
4.0 lnc-BCAR1-1:1
4.1 lnc-BCAR1-1:1
5.0 lnc-BCAR1-1:1
5.1 lnc-MLKL-24:1
5.2 lnc-BCAR1-1:1