Transcript: lnc-BCAS1-5:3

Basic information

LNCipedia transcript ID: lnc-BCAS1-5:3 
LNCipedia gene ID: lnc-BCAS1-5
Location (hg38): chr20:53863693-53864066
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 374 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000055210.1|FTMT27800002158.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -170.6474 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCAS1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-BCAS1-5:3
5.0 lnc-BCAS1-5:3
5.1 lnc-SPATA2-59:3
5.2 lnc-BCAS1-5:3