Transcript: lnc-BCAT1-4:2

Basic information

LNCipedia transcript ID: lnc-BCAT1-4:2 
LNCipedia gene ID: lnc-BCAT1-4
Ensembl Gene ID: ENSG00000226397
Ensembl Transcript ID: ENST00000549262
Location (hg38): chr12:24995063-25006403
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1443 bp
Exons: 4
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549262.6
Alternative gene names: ENSG00000226397.8; C12orf77


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.4663 non-coding 
CPAT coding probability 3.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCAT1-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C12orf77-4:5
5.0 lnc-C12orf77-4:5
5.1 lnc-WBP11-74:1
5.2 lnc-BCAT1-4:2