Transcript: lnc-BCAT1-4:3

Basic information

LNCipedia transcript ID: lnc-BCAT1-4:3 
LNCipedia gene ID: lnc-BCAT1-4
Location (hg38): chr12:24995063-24997519
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1234 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000549262.5
Alternative gene names: ENSG00000226397.7; C12orf77


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -77.89 non-coding 
CPAT coding probability 6.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCAT1-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C12orf77-4:1
4.1 lnc-C12orf77-4:1
5.0 lnc-C12orf77-4:1
5.1 lnc-WBP11-74:2
5.2 lnc-BCAT1-4:3