Transcript: lnc-BCAT1-4:6

Basic information

LNCipedia transcript ID: lnc-BCAT1-4:6 
LNCipedia gene ID: lnc-BCAT1-4
Ensembl Gene ID: ENSG00000226397
Ensembl Transcript ID: ENST00000434912
Location (hg38): chr12:24995670-24996919
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 675 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434912.3
Alternative gene names: ENSG00000226397.7; C12orf77; ENSG00000226397.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -168.4575 non-coding 
CPAT coding probability 6.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCAT1-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C12orf77-4:4
4.1 lnc-C12orf77-4:4
5.0 lnc-C12orf77-4:4
5.1 lnc-WBP11-74:5
5.2 lnc-BCAT1-4:6