Transcript: lnc-BCKDHB-2:1

Basic information

LNCipedia transcript ID: lnc-BCKDHB-2:1 
LNCipedia gene ID: lnc-BCKDHB-2
Ensembl Gene ID: ENSG00000260645
Ensembl Transcript ID: ENST00000569267
Location (hg38): chr6:80466958-80469080
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2123 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569267.1; RP11-250B2.5-001; OTTHUMT00000431279.1; NONHSAT113734
Alternative gene names: ENSG00000260645.1; RP11-250B2.5; OTTHUMG00000175925.1; AL359715.3; AL359715.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.77 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCKDHB-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BCKDHB-2:1
4.0 lnc-BCKDHB-2:1
4.1 lnc-BCKDHB-2:1
5.0 lnc-BCKDHB-2:1
5.1 lnc-CYB5R4-26:1
5.2 lnc-BCKDHB-2:1