Transcript: lnc-BCKDK-4:2

Basic information

LNCipedia transcript ID: lnc-BCKDK-4:2 
LNCipedia gene ID: lnc-BCKDK-4
Ensembl Gene ID: ENSG00000278133
Ensembl Transcript ID: ENST00000613584
Location (hg38): chr16:31123673-31124064
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 392 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613584.1
Alternative gene names: ENSG00000278133.1; RP11-196G11.5; AC135050.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -10.1536 non-coding 
CPAT coding probability 2.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCKDK-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-BCKDK-4:2
4.1 lnc-BCKDK-4:2
5.0 lnc-BCKDK-4:2
5.1 lnc-ZNF646-8:2
5.2 lnc-BCKDK-4:2