Transcript: lnc-BCL2L10-2:1

Basic information

LNCipedia transcript ID: lnc-BCL2L10-2:1 
LNCipedia gene ID: lnc-BCL2L10-2
Ensembl Gene ID: ENSG00000259712
Ensembl Transcript ID: ENST00000558607
Location (hg38): chr15:52056675-52100523
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 635 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558607.1; CTD-2184D3.5-001; OTTHUMT00000419383.1; NONHSAT043907
Alternative gene names: ENSG00000259712.1; CTD-2184D3.5; OTTHUMG00000172596.1; AC023906.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.542 non-coding 
CPAT coding probability 3.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCL2L10-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BCL2L10-2:1
4.0 lnc-BCL2L10-2:1
4.1 lnc-BCL2L10-2:1
5.0 lnc-BCL2L10-2:1
5.1 lnc-DNAAF4-66:4
5.2 lnc-BCL2L10-2:1