Transcript: lnc-BCOR-2:1

Basic information

LNCipedia transcript ID: lnc-BCOR-2:1 
LNCipedia gene ID: lnc-BCOR-2
Ensembl Gene ID: ENSG00000234191
Ensembl Transcript ID: ENST00000438867
Location (hg38): chrX:39401252-39434824
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 786 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017054; ENST00000438867; ENST00000438867.1; RP11-157D23.2-001; OTTHUMT00000060661.1; NONHSAT136670
Alternative gene names: XLOC_008144; linc-RPGR-2; ENSG00000234191; RP11-157D23.2; ENSG00000234191.1; OTTHUMG00000024097.1; AC091808.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -171.6311 non-coding 
CPAT coding probability 6.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCOR-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCOR-1:1
3.1 lnc-BCOR-2:1
4.0 lnc-BCOR-2:1
4.1 lnc-BCOR-2:1
5.0 lnc-BCOR-2:1
5.1 lnc-PCSK1N-88:1
5.2 lnc-BCOR-2:1