Transcript: lnc-BECN2-2:1

Basic information

LNCipedia transcript ID: lnc-BECN2-2:1 
LNCipedia gene ID: lnc-BECN2-2
Ensembl Gene ID: ENSG00000224525
Ensembl Transcript ID: ENST00000421878
Location (hg38): chr1:242203555-242210827
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 766 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421878.2
Alternative gene names: ENSG00000224525.2; RP11-561I11.3; AL591686.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.6845 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BECN2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EXO1-2:2
4.0 lnc-EXO1-2:2
4.1 lnc-EXO1-2:2
5.0 lnc-EXO1-2:2
5.1 lnc-KMO-14:1
5.2 lnc-BECN2-2:1