Transcript: lnc-BECN2-2:4

Basic information

LNCipedia transcript ID: lnc-BECN2-2:4 
LNCipedia gene ID: lnc-BECN2-2
Location (hg38): chr1:242209263-242210827
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 532 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000421878.1; RP11-561I11.2-001; OTTHUMT00000096192.1; NONHSAT010565
Alternative gene names: ENSG00000224525.1; RP11-561I11.2; OTTHUMG00000039868.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.6845 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BECN2-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EXO1-2:1
4.0 lnc-EXO1-2:1
4.1 lnc-EXO1-2:1
5.0 lnc-EXO1-2:1
5.1 lnc-KMO-14:4
5.2 lnc-BECN2-2:4