Transcript: lnc-BEST4-1:2

Basic information

LNCipedia transcript ID: lnc-BEST4-1:2 
LNCipedia gene ID: lnc-BEST4-1
Ensembl Gene ID: ENSG00000225721
Ensembl Transcript ID: ENST00000440985
Location (hg38): chr1:44759037-44762177
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 510 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440985.1; RP11-269F19.2-001; OTTHUMT00000023426.1; NONHSAT002894; ENST00000440985.5
Alternative gene names: ENSG00000225721.1; RP11-269F19.2; OTTHUMG00000008489.1; ENSG00000225721.5; AL592166.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 184.7634 coding 
CPAT coding probability 57.31% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BEST4-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BEST4-1:2
4.0 lnc-BEST4-1:2
4.1 lnc-BEST4-1:2
5.0 lnc-BEST4-1:2
5.1 lnc-PRDX1-19:3
5.2 lnc-BEST4-1:2