Transcript: lnc-BIRC6-1:4

Basic information

LNCipedia transcript ID: lnc-BIRC6-1:4 
LNCipedia gene ID: lnc-BIRC6-1
Location (hg38): chr2:32309031-32313734
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3273 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004743; NONHSAT069972
Alternative gene names: XLOC_001417; linc-BIRC6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.2764 non-coding 
CPAT coding probability 2.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BIRC6-1:4 no no no no

Available literature

  1. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-YIPF4-1:1
3.1 lnc-YIPF4-1:1
4.0 lnc-YIPF4-1:1
4.1 lnc-YIPF4-1:1
5.0 lnc-YIPF4-1:1
5.1 lnc-LTBP1-17:1
5.2 lnc-BIRC6-1:4