Transcript: lnc-BLNK-3:2

Basic information

LNCipedia transcript ID: lnc-BLNK-3:2 
LNCipedia gene ID: lnc-BLNK-3
Ensembl Gene ID: ENSG00000229418
Ensembl Transcript ID: ENST00000454484
Location (hg38): chr10:96292685-96306695
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1924 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454484.2
Alternative gene names: ENSG00000229418.2; RP11-35J23.1; AL136181.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.8494 non-coding 
CPAT coding probability 9.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BLNK-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BLNK-3:2
4.0 lnc-BLNK-3:2
4.1 lnc-BLNK-3:2
5.0 lnc-BLNK-3:2
5.1 lnc-NOC3L-38:2
5.2 lnc-BLNK-3:2