Transcript: lnc-BLOC1S3-2:1

Basic information

LNCipedia transcript ID: lnc-BLOC1S3-2:1 
LNCipedia gene ID: lnc-BLOC1S3-2
Ensembl Gene ID: ENSG00000266958
Ensembl Transcript ID: ENST00000591569
Location (hg38): chr19:45187388-45216933
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 540 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000591569.1
Alternative gene names: ENSG00000266958.1; AC006126.3; AC005779.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -108.4276 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BLOC1S3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-BLOC1S3-2:1
4.1 lnc-BLOC1S3-2:1
5.0 lnc-BLOC1S3-2:1
5.1 lnc-APOC4-APOC2-15:1
5.2 lnc-BLOC1S3-2:1