Transcript: lnc-BMP2-2:1

Basic information

LNCipedia transcript ID: lnc-BMP2-2:1 
LNCipedia gene ID: lnc-BMP2-2
Ensembl Gene ID: ENSG00000232271
Ensembl Transcript ID: ENST00000425900
Location (hg38): chr20:7069614-7146656
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 381 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027898; ENST00000425900; ENST00000425900.1; RP4-764O22.1-001; OTTHUMT00000077920.1; NONHSAT078534
Alternative gene names: XLOC_013452; linc-PLCB1-2; ENSG00000232271; RP4-764O22.1; ENSG00000232271.1; OTTHUMG00000031835.1; AL096799.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -288.6949 non-coding 
CPAT coding probability 9.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BMP2-2:1 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BMP2-2:1
3.1 lnc-BMP2-2:1
4.0 lnc-BMP2-2:1
4.1 lnc-BMP2-2:1
5.0 lnc-BMP2-2:1
5.1 lnc-LAMP5-12:1
5.2 lnc-BMP2-2:1