Transcript: lnc-BMP3-1:2

Basic information

LNCipedia transcript ID: lnc-BMP3-1:2 
LNCipedia gene ID: lnc-BMP3-1
Ensembl Gene ID: ENSG00000251059
Ensembl Transcript ID: ENST00000505175
Location (hg38): chr4:81173875-81193180
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 432 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505175.1; RP11-100N20.1-002; OTTHUMT00000362778.1; NONHSAT097145
Alternative gene names: ENSG00000251059.1; RP11-100N20.1; OTTHUMG00000160880.1; ENSG00000251059.5; AC139722.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -346.1039 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BMP3-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BMP3-1:2
4.0 lnc-BMP3-1:2
4.1 lnc-BMP3-1:2
5.0 lnc-BMP3-1:2
5.1 lnc-C4orf22-1:2
5.2 lnc-BMP3-1:2