Transcript: lnc-BMT2-1:7

Basic information

LNCipedia transcript ID: lnc-BMT2-1:7 
LNCipedia gene ID: lnc-BMT2-1
Ensembl Gene ID: ENSG00000234520
Ensembl Transcript ID: ENST00000447785
Location (hg38): chr7:112973619-112995627
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447785; ENST00000447785.1; AC018464.3-002; OTTHUMT00000338937.1; NONHSAT122809
Alternative gene names: ENSG00000234520; AC018464.3; ENSG00000234520.1; OTTHUMG00000155236.1; ENSG00000234520.5; HRAT17; AC018464.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.8767 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BMT2-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C7orf60-1:2
3.1 lnc-C7orf60-1:2
4.0 lnc-C7orf60-1:2
4.1 lnc-C7orf60-1:2
5.0 lnc-C7orf60-1:2
5.1 lnc-TFEC-35:7
5.2 lnc-BMT2-1:7