Transcript: lnc-BNIP1-3:2

Basic information

LNCipedia transcript ID: lnc-BNIP1-3:2 
LNCipedia gene ID: lnc-BNIP1-3
Ensembl Gene ID: ENSG00000253968
Ensembl Transcript ID: ENST00000523205
Location (hg38): chr5:173414035-173451165
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 539 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523205; ENST00000523205.1; CTB-32H22.1-001; OTTHUMT00000372784.1; NONHSAT105181
Alternative gene names: ENSG00000253968; CTB-32H22.1; ENSG00000253968.1; OTTHUMG00000163340.1; AC016573.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.9899 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BNIP1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BNIP1-3:2
3.1 lnc-BNIP1-3:2
4.0 lnc-BNIP1-3:2
4.1 lnc-BNIP1-3:2
5.0 lnc-BNIP1-3:2
5.1 lnc-ATP6V0E1-19:2
5.2 lnc-BNIP1-3:2