Transcript: lnc-BNIP1-5:4

Basic information

LNCipedia transcript ID: lnc-BNIP1-5:4 
LNCipedia gene ID: lnc-BNIP1-5
Location (hg38): chr5:173328599-173334751
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6153 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000078731.1|ENCT00000353282.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -48.0282 non-coding 
CPAT coding probability 14.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BNIP1-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-BNIP1-5:4
5.0 lnc-BNIP1-5:4
5.1 lnc-ATP6V0E1-16:2
5.2 lnc-BNIP1-5:4