Transcript: lnc-BOD1-1:2

Basic information

LNCipedia transcript ID: lnc-BOD1-1:2 
HGNC Gene Symbol: lnc-BOD1-1    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1484
Ensembl Gene ID: ENSG00000253686
Ensembl Transcript ID: ENST00000517733
Location (hg38): chr5:173707614-173746209
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517733; ENST00000517733.1; CTB-43E15.3-002; OTTHUMT00000372790.1; NONHSAT105204
Alternative gene names: ENSG00000253686; CTB-43E15.3; ENSG00000253686.1; OTTHUMG00000163343.1; LINC01484


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.6208 non-coding 
CPAT coding probability 3.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BOD1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BOD1-1:2
3.1 lnc-BOD1-1:2
4.0 lnc-BOD1-1:2
4.1 lnc-BOD1-1:2
5.0 lnc-BOD1-1:2
5.1 lnc-PDLIM7-62:17
5.2 lnc-BOD1-1:2