Transcript: lnc-BOD1-1:20

Basic information

LNCipedia transcript ID: lnc-BOD1-1:20 
HGNC Gene Symbol: lnc-BOD1-1    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1485
Ensembl Gene ID: ENSG00000254211
Ensembl Transcript ID: ENST00000522731
Location (hg38): chr5:173789275-173790942
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 614 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522731; ENST00000522731.1; CTB-43E15.4-004; OTTHUMT00000372798.1
Alternative gene names: ENSG00000254211; CTB-43E15.4; ENSG00000254211.1; OTTHUMG00000163337.2; ENSG00000254211.5; LINC01485


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.341 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BOD1-1:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BOD1-2:6
3.1 lnc-BOD1-2:6
4.0 lnc-BOD1-1:20
4.1 lnc-BOD1-1:20
5.0 lnc-BOD1-1:20
5.1 lnc-PDLIM7-62:8
5.2 lnc-BOD1-1:20