Transcript: lnc-BOD1-1:22

Basic information

LNCipedia transcript ID: lnc-BOD1-1:22 
LNCipedia gene ID: lnc-BOD1-1
Location (hg38): chr5:173786539-173790683
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 814 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00010562
Alternative gene names: XLOC_005088; linc-BOD1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.6503 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BOD1-1:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BOD1-2:8
3.1 lnc-BOD1-2:8
4.0 lnc-BOD1-1:22
4.1 lnc-BOD1-1:22
5.0 lnc-BOD1-1:22
5.1 lnc-PDLIM7-62:11
5.2 lnc-BOD1-1:22