Transcript: lnc-BPGM-1:1

Basic information

LNCipedia transcript ID: lnc-BPGM-1:1 
LNCipedia gene ID: lnc-BPGM-1
Ensembl Gene ID: ENSG00000224375
Ensembl Transcript ID: ENST00000422042
Location (hg38): chr7:134684144-134687990
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 253 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013083; ENST00000422042; ENST00000422042.1; AC009276.4-001; OTTHUMT00000339930.1; NONHSAT123469
Alternative gene names: XLOC_006262; linc-CALD1; ENSG00000224375; AC009276.4; ENSG00000224375.1; OTTHUMG00000155405.1; AC009276.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.1743 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BPGM-1:1 no no no no

Available literature

  1. Reiche (2014), Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BPGM-1:1
3.1 lnc-BPGM-1:1
4.0 lnc-BPGM-1:1
4.1 lnc-BPGM-1:1
5.0 lnc-BPGM-1:1
5.1 lnc-BPGM-1:1
5.2 lnc-BPGM-1:1