Transcript: lnc-BPY2C-3:1

Basic information

LNCipedia transcript ID: lnc-BPY2C-3:1 
LNCipedia gene ID: lnc-BPY2C-3
Ensembl Gene ID: ENSG00000228786
Ensembl Transcript ID: ENST00000427373
Location (hg38): chrY:25378300-25394719
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 842 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427373.1; LINC00266-4P-001; OTTHUMT00000104946.1; ENST00000427373.5
Alternative gene names: ENSG00000228786.1; LINC00266-4P; OTTHUMG00000045201.1; ENSG00000228786.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.9822 non-coding 
CPAT coding probability 52.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BPY2C-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BPY2C-3:1
4.0 lnc-BPY2C-3:1
4.1 lnc-BPY2C-3:1
5.0 lnc-BPY2C-3:1
5.1 lnc-DAZ1-42:1
5.2 lnc-BPY2C-3:1