Transcript: lnc-BRCA1-3:10

Basic information

LNCipedia transcript ID: lnc-BRCA1-3:10 
LNCipedia gene ID: lnc-BRCA1-3
Location (hg38): chr17:43159240-43171045
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6268 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000267002.1|MICT00000148134.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 38.6517 non-coding 
CPAT coding probability 8.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRCA1-3:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-BRCA1-3:10
5.0 lnc-BRCA1-3:10
5.1 lnc-BRCA1-3:10
5.2 lnc-BRCA1-3:10