Transcript: lnc-BRCA1-3:16

Basic information

LNCipedia transcript ID: lnc-BRCA1-3:16 
LNCipedia gene ID: lnc-BRCA1-3
Ensembl Gene ID: ENSG00000267002
Ensembl Transcript ID: ENST00000642336
Location (hg38): chr17:43160086-43171036
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 6025 bp
Exons: 4
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000642336.1
Alternative gene names: ENSG00000267002.3; AC060780.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 30.5065 non-coding 
CPAT coding probability 8.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRCA1-3:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-BRCA1-3:16
5.1 lnc-BRCA1-3:16
5.2 lnc-BRCA1-3:16