Transcript: lnc-BRCA1-3:5

Basic information

LNCipedia transcript ID: lnc-BRCA1-3:5 
LNCipedia gene ID: lnc-BRCA1-3
Location (hg38): chr17:43164183-43170403
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1191 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT053823; ENST00000590740.1
Alternative gene names: ENSG00000267002.1; RP11-242D8.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.5065 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRCA1-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VAT1-3:2
4.0 lnc-BRCA1-3:5
4.1 lnc-BRCA1-3:5
5.0 lnc-BRCA1-3:5
5.1 lnc-BRCA1-3:5
5.2 lnc-BRCA1-3:5